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pu6 3 bbsi chirna vector  (Addgene inc)


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    Structured Review

    Addgene inc pu6 3 bbsi chirna vector
    Pu6 3 Bbsi Chirna Vector, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 270 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/plasmid+pu6/pU6-BbsI-chiRNA+(Plasmid+%2345946)/pmc13018890-438-19-21
    Average 94 stars, based on 270 article reviews
    pu6 3 bbsi chirna vector - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Compositions for use in treating autosomal dominant BEST1-related retinopathies
    Article Snippet: To evaluate computationally designed sgRNAs for efficiency and allele specificity, we adapted a fluorescence-based assay and cloned a genomic fragment of ̃500 bp containing either the on-target or the non-target BEST1 sequence between EGFP (enhanced green fluorescent protein) fragments of the pCAG-EGxxFP plasmid (Addgene, UK). .. The resulting target plasmid was co-transfected into HEK293 cells with the SpCas9-expressing plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (Addgene) and the corresponding sgRNA with varying sequence length (20-17 bp). ..

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2'O-methylation.
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI) _CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG-sgRNA 3′ and a 3′ C-sgRNA-CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFPsgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2’ O -methylation
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG- sgRNA 3′ and a 3′ C- sgRNA -CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB ® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFP-sgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Article Title: The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations
    Article Snippet: .. Previously generated mES cell knockout lines (Xrcc5-/-, Polq-/-, Lig4-/-, Poll-/- and Polm-/-) and wild-type control cells were transfected with plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (a gift from Ralf Kuehn; Addgene plasmid #64324) that co-expressed sgRNAs targeting the Hprt locus (Supplementary Table ). .. Cells were transfected in suspension using Lipofectamine 2000 (Invitrogen) using a Lipofectamine:DNA ratio of 2.4:1, incubated for 30 min at at 37 °C and 5% CO in round-bottom tubes and subsequently seeded on gelatin-coated plates.

    Article Title: COUP-TFII regulates early bipotential gonad signaling and commitment to ovarian progenitors.
    Article Snippet: .. The two strands of the gRNA were annealed and cloned downstream of the human U6 promoter using the BbsI (NEB) restriction site in the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene). ..

    Article Title: Expansion and Precise CRISPR-Cas9 Gene Repair of Autologous T-Memory Stem Cells from Patients with T-Cell Immunodeficiencies
    Article Snippet: Order forward and reverse DNA oligos [with cloning-compatible overhangs as configured by CrisprGold (Figure S3) or CRISPOR] corresponding to the 5–6 most high-ranking gRNAs (specificity score ≥ 12 in CrispRGold; Figure S3), phosphorylate, anneal, and clone them via BbsI sites (Figure S5) into a guide RNA/Cas9 expression plasmid, and transfect into HEK293T cells. .. We use the plasmid pU6-(BbsI) CBhCas9-T2A-mCherry (Addgene plasmid #64324, https://www.addgene.org/64324/; Chu et al. [20]). .. It was modified by us to express the fluorescent marker mCherry and is originally based on Addgene plasmid #42230, https://www.addgene.org/42230/; Cong et al. [21], Ran et al. [22]).

    Article Title: Mutational signature catalogue (MUSIC) of DNA double-strand break repair
    Article Snippet: Lentiviral packaging constructs pMDLg/pRRE, pRSV-Rev and pMD2.G were a gift from Didier Trono (Addgene# 12251, 12253, 12259). .. Plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry was a gift from Ralf Kuehn (Addgene# 64324). .. SgRNA sequences were cloned into the pKLV2-U6gRNA5(BbsI)-PGKpuro2ABFP-W backbone, the pLenti-multi-Guide backbone, or into the pU6-(BbsI)_CBh-Cas9-T2A-mCherry backbone using two custom complementary DNA oligos (IDT) consisting of the target sequence and BbsI overhangs, which were melted, annealed and ligated (Promega, Catalogue# M180B) into the relevant BbsI -digested (NEB, Catalogue# R3539S) plasmid backbone as described previously .

    Article Title: COUP-TFII regulates early bipotential gonad signaling and commitment to ovarian progenitors
    Article Snippet: .. The two strands of the gRNA were annealed and cloned downstream of the human U6 promoter using the BbsI (NEB) restriction site in the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene). ..

    Sequencing:

    Article Title: Compositions for use in treating autosomal dominant BEST1-related retinopathies
    Article Snippet: To evaluate computationally designed sgRNAs for efficiency and allele specificity, we adapted a fluorescence-based assay and cloned a genomic fragment of ̃500 bp containing either the on-target or the non-target BEST1 sequence between EGFP (enhanced green fluorescent protein) fragments of the pCAG-EGxxFP plasmid (Addgene, UK). .. The resulting target plasmid was co-transfected into HEK293 cells with the SpCas9-expressing plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (Addgene) and the corresponding sgRNA with varying sequence length (20-17 bp). ..

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2'O-methylation.
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI) _CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG-sgRNA 3′ and a 3′ C-sgRNA-CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFPsgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2’ O -methylation
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG- sgRNA 3′ and a 3′ C- sgRNA -CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB ® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFP-sgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Cloning:

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2'O-methylation.
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI) _CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG-sgRNA 3′ and a 3′ C-sgRNA-CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFPsgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Article Title: Bacterial RNA sensing by TLR8 requires RNase 6 processing and is inhibited by RNA 2’ O -methylation
    Article Snippet: .. To allow their cloning into the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene), the forward and reverse sgRNAs were flanked by a 5′ CACCG- sgRNA 3′ and a 3′ C- sgRNA -CAAA 5′ additional sequence, respectively. .. Followed by transformation into NEB ® 5-alpha E. coli (New England Biolabs) by heat shock, pU6-(BbsI)_CBh-Cas9-T2A-BFP-sgRNA was expanded, and isolated using Maxiprep kits (Qiagen).

    Generated:

    Article Title: The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations
    Article Snippet: .. Previously generated mES cell knockout lines (Xrcc5-/-, Polq-/-, Lig4-/-, Poll-/- and Polm-/-) and wild-type control cells were transfected with plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (a gift from Ralf Kuehn; Addgene plasmid #64324) that co-expressed sgRNAs targeting the Hprt locus (Supplementary Table ). .. Cells were transfected in suspension using Lipofectamine 2000 (Invitrogen) using a Lipofectamine:DNA ratio of 2.4:1, incubated for 30 min at at 37 °C and 5% CO in round-bottom tubes and subsequently seeded on gelatin-coated plates.

    Knock-Out:

    Article Title: The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations
    Article Snippet: .. Previously generated mES cell knockout lines (Xrcc5-/-, Polq-/-, Lig4-/-, Poll-/- and Polm-/-) and wild-type control cells were transfected with plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (a gift from Ralf Kuehn; Addgene plasmid #64324) that co-expressed sgRNAs targeting the Hprt locus (Supplementary Table ). .. Cells were transfected in suspension using Lipofectamine 2000 (Invitrogen) using a Lipofectamine:DNA ratio of 2.4:1, incubated for 30 min at at 37 °C and 5% CO in round-bottom tubes and subsequently seeded on gelatin-coated plates.

    Control:

    Article Title: The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations
    Article Snippet: .. Previously generated mES cell knockout lines (Xrcc5-/-, Polq-/-, Lig4-/-, Poll-/- and Polm-/-) and wild-type control cells were transfected with plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (a gift from Ralf Kuehn; Addgene plasmid #64324) that co-expressed sgRNAs targeting the Hprt locus (Supplementary Table ). .. Cells were transfected in suspension using Lipofectamine 2000 (Invitrogen) using a Lipofectamine:DNA ratio of 2.4:1, incubated for 30 min at at 37 °C and 5% CO in round-bottom tubes and subsequently seeded on gelatin-coated plates.

    Transfection:

    Article Title: The interplay of DNA repair context with target sequence predictably biases Cas9-generated mutations
    Article Snippet: .. Previously generated mES cell knockout lines (Xrcc5-/-, Polq-/-, Lig4-/-, Poll-/- and Polm-/-) and wild-type control cells were transfected with plasmid pU6-(BbsI)_CBh-Cas9-T2A-mCherry (a gift from Ralf Kuehn; Addgene plasmid #64324) that co-expressed sgRNAs targeting the Hprt locus (Supplementary Table ). .. Cells were transfected in suspension using Lipofectamine 2000 (Invitrogen) using a Lipofectamine:DNA ratio of 2.4:1, incubated for 30 min at at 37 °C and 5% CO in round-bottom tubes and subsequently seeded on gelatin-coated plates.

    Clone Assay:

    Article Title: COUP-TFII regulates early bipotential gonad signaling and commitment to ovarian progenitors.
    Article Snippet: .. The two strands of the gRNA were annealed and cloned downstream of the human U6 promoter using the BbsI (NEB) restriction site in the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene). ..

    Article Title: COUP-TFII regulates early bipotential gonad signaling and commitment to ovarian progenitors
    Article Snippet: .. The two strands of the gRNA were annealed and cloned downstream of the human U6 promoter using the BbsI (NEB) restriction site in the plasmid pU6-(BbsI)_CBh-Cas9-T2A-BFP (Addgene). ..



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